YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|111601339, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLRTMIVGI VLSLQTALGI LGNVSLLFYY LIIYYNEHTM KKIDMILIHV FTSNFLTILS  60
   61 KGLPEVVKAF GWKQLFSDVG CKLTNYFQRL ARSMSISTTC FLSVFQAITI SPRNSCLKEY 120
  121 KTKTTKFMGL FFSLCWILFI LVNMLFPIYT ATNRNKKNKT QKRDFEFCHS IGRDKLVDIM 180
  181 YTAFCVFPEV IFSLLIVSSS AFMIFILYGH KKRVQHTLHI HASIRNSAEN RATHNILTLV 240
  241 CTFLAFYTLS SILQGYIALS NNPSWWVMNI TAIISMCFPT LGPIVISPDF AISRFCFT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.46
Transmembrane Helix	8	33	0.84
Cytoplasmic	34	44	0.42
Transmembrane Helix	45	63	0.61
Non-Cytoplasmic	64	92	0.60
Transmembrane Helix	93	110	0.63
Cytoplasmic	111	126	0.86
Transmembrane Helix	127	148	0.89
Non-Cytoplasmic	149	189	0.92
Transmembrane Helix	190	209	0.96
Cytoplasmic	210	231	0.94
Transmembrane Helix	232	257	0.83
Non-Cytoplasmic	258	264	0.89
Transmembrane Helix	265	287	0.87
Cytoplasmic	288	298	0.81