YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148706066, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRNMAIGI ILLVQSILGI LGNIFLLLYY LILYYKECTL KIVDLILIHV FTSNFLIILS  60
   61 KGPAQIMAAF GWNQFFNDVG CKHILYIQRL GRSMSISTTC LLSVFQAITI SPRNSYWKEI 120
  121 KIKTTKLIGL LILLCWIVCL LVNTFFPLNA STKRNSKNKT QKRGFEFCLS QGRDKVVDTV 180
  181 YIAFWVFPEV LFSVLIVCSS TFMIVTLYGH KKRVQGILST HASQRMSPEN RATQKILTLV 240
  241 CTFLAFYTLS SILQGYIALS HNPSWWVMNI TSIISMCFPT LGPFVMSHYS IFSRFCFT

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.68
Transmembrane Helix	8	33	0.88
Cytoplasmic	34	44	0.61
Transmembrane Helix	45	65	0.83
Non-Cytoplasmic	66	92	0.64
Transmembrane Helix	93	110	0.71
Cytoplasmic	111	126	0.81
Transmembrane Helix	127	146	0.95
Non-Cytoplasmic	147	189	0.91
Transmembrane Helix	190	209	0.94
Cytoplasmic	210	235	0.92
Transmembrane Helix	236	258	0.90
Non-Cytoplasmic	259	265	0.88
Transmembrane Helix	266	289	0.85
Cytoplasmic	290	298	0.84