YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558685, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNDKMDSKN LAIFVILILQ CSVGILKNIC LLSYYLMLHY NKHTLKRIDL IFMNMFIANF  60
   61 FIIFSRIVLQ TMQTFGMELF FNVFVCKFPM YTERVGRSVS IGTICLLSVF QAITISPSDS 120
  121 CLNGLKVKVP KYINLSIFLC WVLFLGLNMI SPMYVYIKWN SNNVTYKRTS NYCFSLGHDE 180
  181 FTGPMITTFF VFPEVLFAIL IVCSGSLMVN ILYRHKQRVQ HIHSTYAPTR TSHESRATKN 240
  241 ILVLVSLFIG FYSLSSILHT CVALFCGAGW WMINITVIIH LCFPTLGPFI VTQDTALPRF 300
  301 SLSWIRNTGR T

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.76
Transmembrane Helix	12	36	0.82
Cytoplasmic	37	49	0.76
Transmembrane Helix	50	70	0.91
Non-Cytoplasmic	71	97	0.75
Transmembrane Helix	98	115	0.81
Cytoplasmic	116	131	0.84
Transmembrane Helix	132	156	0.84
Non-Cytoplasmic	157	189	0.95
Transmembrane Helix	190	213	0.88
Cytoplasmic	214	239	0.97
Transmembrane Helix	240	263	0.87
Non-Cytoplasmic	264	269	0.68
Transmembrane Helix	270	292	0.85
Cytoplasmic	293	311	0.88