YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DPEP3_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.56
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQPAGLEGPR ALGLRPLGHR LSLLGVLLLV PSLWVTCTLT TPSPSSAPTT PEASNATTAP  60
   61 GIPNDTATSG VTSDPRLREQ ALALMRDFPL VDGHNDLPLL LRELFQNQLQ DVNLRNFTRG 120
  121 QTNLDRLRDG LVGAQFWSAY IPCQTQDRDA VRLALEQIDL IRRMCSAYPE LELVTSADGL 180
  181 NNTQKLACLI GVEGGHSLDT SLAVLRSFYE LGVRYLTLTF TCSTPWAESA TKFRHHFYTN 240
  241 ISGLTSFGEK VVEEMNRLGM MIDLSHASDT LVKQTLEVSQ APVIFSHSAA RSVCDNLLNI 300
  301 PDDILQLLKK NGGIVMVTLS MGVLQCSLFA NVSTVADHFD HIRTVIGSEF IGIGGSYDGS 360
  361 GRFPQGLEDV STYPVLIEEL LSRGWDEREL QGVLRGNLLR VFRQVEQVRE KSLGQSPVEV 420
  421 KFPERQQSNT CHSHLLPQPQ EDQHQDTHLK VTKLPNILQR ASKAPPHPLP GLMATLTSLA 480
  481 LILWLCCSGH RAV

Type	Start	End	Confidence
Signal Peptide	1	37	0.64
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	466	0.98
Transmembrane Helix	467	487	0.82
Cytoplasmic	488	493	0.71