YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717779, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKHRIDFWN LATRIILLSQ TTVGILVNFS LMFHYLVLYY RECRLKPTDF ILLHLLAANS  60
   61 LFILSSGVPH IIAFWGLKQF LNDIVCEFLF YIQGFGRSVS IWTTCLLSVF QAMTISPRKS 120
  121 CWKDHKVKAI MHNGCSISLM WVLHMLMHFI IFVYPFIKMN SKNVTKLQDF GYCSVVKKQN 180
  181 ITEFLYAALV MFPEFFFSVL IAWSSGSMIV ILFKHKKKVQ HIHSTHVSRR NSPESRATQN 240
  241 ILALVSTFLA FYTLSSILRG CIALLYNYNW WLMNINHITS LCFPSFGPCV FMRSYSLMSR 300
  301 FNLAHLRKIN LSPNLVINM

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.91
Transmembrane Helix	16	38	0.91
Cytoplasmic	39	49	0.92
Transmembrane Helix	50	73	0.92
Non-Cytoplasmic	74	93	0.87
Transmembrane Helix	94	115	0.84
Cytoplasmic	116	129	0.90
Transmembrane Helix	130	152	0.87
Non-Cytoplasmic	153	193	0.91
Transmembrane Helix	194	213	0.94
Cytoplasmic	214	239	0.90
Transmembrane Helix	240	263	0.83
Non-Cytoplasmic	264	274	0.80
Transmembrane Helix	275	297	0.87
Cytoplasmic	298	319	0.97