YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148706081, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQVVHAYLL MQNPRDQAEG SHQITSGDMA IGVILVSQTV AGVLGNSCLL YNYIVLYFKS  60
   61 YKLKHMDWIL MHLIVSNFLT LLCKGVPQAM AAFGFQCFFN DFECKLLSYL HRVGRGVSFG 120
  121 SACLLSVFQV ITISPEDAIW TILKKKAPKC ISSSLYLTWI LSLLFSIVSL KYMSAKLCNV 180
  181 NNTNLKDLGY CSSLSFDKTA EVLHAAHVII PGAVCMFFML CSSGSMVLIL HRHRQRMEHM 240
  241 IRSNIFPRSS HESRATQTIL LLVSTFVCFY TLSTLLTICL NFLVNLTWHL VSIHAIFSMC 300
  301 FASVSPYLLM RHGSSTSIHC FAWVNYQKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	30	0.83
Transmembrane Helix	31	55	0.76
Cytoplasmic	56	67	0.88
Transmembrane Helix	68	91	0.85
Non-Cytoplasmic	92	115	0.84
Transmembrane Helix	116	134	0.90
Cytoplasmic	135	154	0.81
Transmembrane Helix	155	175	0.88
Non-Cytoplasmic	176	208	0.94
Transmembrane Helix	209	230	0.95
Cytoplasmic	231	257	0.92
Transmembrane Helix	258	280	0.91
Non-Cytoplasmic	281	289	0.71
Transmembrane Helix	290	309	0.95
Cytoplasmic	310	329	0.95