YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187950905, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENSDIVISV IFLSQTVVGI LGNSFLVYHY LMLYYMRCRL KFTDWILQHL IVANFLTLLC  60
   61 KGIPHTVSAF GLKNFLDDIG CKLTFYLHRI GRGVSISSTC FLSVFQAITI SPSASRWTQL 120
  121 KAKSPSYIAS CVYMSWALSF LVNIAFPMDM RARQNNRNIT RLRVYGICST VHHNKVSDII 180
  181 NAVLLSIPDV VFMVLMVWSS GYMVCILYRH KQRMKHIHRS TFSFRSSAEF RATKTILLLV 240
  241 STFVFFYTIS CLFQINLALF HNPTSLWVNM ASVVTACFPT VSPFLVISS

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	31	0.85
Cytoplasmic	32	44	0.78
Transmembrane Helix	45	65	0.83
Non-Cytoplasmic	66	89	0.77
Transmembrane Helix	90	110	0.82
Cytoplasmic	111	125	0.75
Transmembrane Helix	126	146	0.92
Non-Cytoplasmic	147	189	0.87
Transmembrane Helix	190	209	0.93
Cytoplasmic	210	234	0.90
Transmembrane Helix	235	257	0.88
Non-Cytoplasmic	258	265	0.83
Transmembrane Helix	266	287	0.92
Cytoplasmic	288	289	0.85