YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558717, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEDFAMGI FLFSQTTVGM LGNSSILFYY IILISTGKPL MPKDVIIEHL TFANCLSVIS  60
   61 KGIPQTLLNY GFKDFLDDIG CKLINYVYRI TRGMSLYSMC ILSCFQAITI SPNNYRWVTL 120
  121 KQRATKYIGP SCSVGWLVHL FLNIMIPLRV SGPRYNKNVT KWEIYEYCSW FTFGNVGAAL 180
  181 YMFLLCFSDG LCLGLMTCSS VSMVSILYRH KRQVKYIHSS QHFLNASPEN RATQSILILV 240
  241 CTFVISYLFS SIMVIFMSYF KYPMLLRVSV FTFLETCFPI ICPFVLMSNI KPSFSLFLSC 300
  301 FCK

Type	Start	End	Confidence
Cytoplasmic	1	9	0.40
Transmembrane Helix	10	33	0.87
Non-Cytoplasmic	34	92	0.44
Transmembrane Helix	93	115	0.72
Cytoplasmic	116	126	0.54
Transmembrane Helix	127	146	0.86
Non-Cytoplasmic	147	178	0.59
Transmembrane Helix	179	208	0.79
Cytoplasmic	209	235	0.88
Transmembrane Helix	236	257	0.94
Non-Cytoplasmic	258	267	0.67
Transmembrane Helix	268	287	0.90
Cytoplasmic	288	303	0.80