YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148706168, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMTSINLPM GIFLFSQIVM GIFGNSSILF YYVIFIFSGK HLMPKDMIIE HLTLSNCLSL  60
   61 ISKGIPQTLS DFGFKNFLDD IGCKVIMYIY RVTRGMSLYA MCLLGCFQAI TISPSNSRWI 120
  121 MLKHRATKYI GSSCLVSWLV NLLLNIMTLV KVTVPTYSKN VTNTNSYGYC SWFAPSNLAT 180
  181 ALYMFLLCFC DGLCLSLMAC SSVSMMNILY KHKRQVKHIH SAQHLLKVSP EDRATQTILI 240
  241 LVCTFIISYT ISSLRVIFTT YSNVSEIWRV SVFIFLEICF PIFCPFVLIS NIKCSFRLFL 300
  301 PFCGKR

Type	Start	End	Confidence
Cytoplasmic	1	11	0.76
Transmembrane Helix	12	34	0.92
Non-Cytoplasmic	35	94	0.85
Transmembrane Helix	95	115	0.87
Cytoplasmic	116	128	0.81
Transmembrane Helix	129	150	0.86
Non-Cytoplasmic	151	180	0.90
Transmembrane Helix	181	204	0.91
Cytoplasmic	205	236	0.90
Transmembrane Helix	237	258	0.91
Non-Cytoplasmic	259	269	0.82
Transmembrane Helix	270	292	0.88
Cytoplasmic	293	306	0.93