YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148706167, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPENMVMGI VFILQTTVGI LVNSSVLLHY LVPGFTGKGL KLKTLIVKHL TLANSLSIIS  60
   61 RGIPQIMAEF GMKYFLDDIG CKLVLYLYRV SRGVSLYTTC LLSCFQAAII SSSTTKWMKF 120
  121 KHKAIKYMGP SCSLSWPMNL LLNVMILVTV TSSSNRRNAT KKLTYGYCSA SVSGTIATPL 180
  181 YMLLLSFTDV LCLSLMSWAS VFMLSILHRH KKQVQYIHGV QHFLRVSPEA RATQTILILA 240
  241 CTFVTFYSIS SIMVLYSALF GNPGLWVINI ISVLETCYPI FCSFVLISNN SSASRLYLHC 300
  301 WWKR

Type	Start	End	Confidence
Cytoplasmic	1	8	0.60
Transmembrane Helix	9	32	0.87
Non-Cytoplasmic	33	92	0.55
Transmembrane Helix	93	115	0.79
Cytoplasmic	116	131	0.50
Transmembrane Helix	132	151	0.73
Non-Cytoplasmic	152	174	0.44
Transmembrane Helix	175	207	0.76
Cytoplasmic	208	234	0.92
Transmembrane Helix	235	258	0.90
Non-Cytoplasmic	259	265	0.81
Transmembrane Helix	266	287	0.89
Cytoplasmic	288	304	0.86