YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|21717771, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNLLLFILY MYIFLVQPHQ KKPVDMIFTH LMLVNVLSIM FKLMPDVMRS FAVRILFHDV  60
   61 VCKAVLYAYS VTRGLSLCTI LLLSVFQAIT LSSKHSKWAW LKSKLESCIF PLFLIMWIIN 120
  121 TFLYLPMVEN IKGKINFTFV DSKYSQIYCR SSQVRHHTTK SLVTALIIRD VLFVFLMIWS 180
  181 SLYMVSLLFR HNRSTRHVHS FSVSLHASSE KRATHSILLL VAFFMFFYCS NTFVTFYSLY 240
  241 QPKSNPVLDL IGGVLSSGYP TVCPYVLLNN RKLISKFISS FSNFKCTFFA RGCHC

Type	Start	End	Confidence
Cytoplasmic	1	25	0.86
Transmembrane Helix	26	45	0.85
Non-Cytoplasmic	46	65	0.84
Transmembrane Helix	66	91	0.79
Cytoplasmic	92	106	0.87
Transmembrane Helix	107	128	0.87
Non-Cytoplasmic	129	170	0.92
Transmembrane Helix	171	189	0.93
Cytoplasmic	190	215	0.90
Transmembrane Helix	216	237	0.91
Non-Cytoplasmic	238	246	0.84
Transmembrane Helix	247	268	0.81
Cytoplasmic	269	295	0.85