YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMED4_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVGVGPLQ GMVRFGLLVL TVCAACARGL YFHIGETEKR CFIEEIPDET MVIGNYRTQM  60
   61 WDKQKEVFLP STPGLGMHVE VKDPDGKVVL SRQYGSEGRF TFTSHTPGDH QICLHSNSTR 120
  121 MALFAGGKLR VHLDIQVGEH ANNYPEIAAK DKLTELQLRA RQLLDQVEQI QKEQDYQRYR 180
  181 EERFRLTSES TNQRVLWWSI AQTVILILTG IWQMRHLKSF FEAKKLV

Type	Start	End	Confidence
Signal Peptide	1	29	0.54
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	194	0.73
Transmembrane Helix	195	214	0.90
Cytoplasmic	215	227	0.65