YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18558852, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSRDLTLGI FFLSQIVLGM LGNSALLCCF IIADFTGVRT RPIDLIVKHL TWANIMVVLC  60
   61 KGIPQTMTAF GHTYFLDDIT CKLVFYLHRV CRGFSLGCTC LLSVFQAITI SLNNSKSAQF 120
  121 KARAPKIISS SLVLCWSLCL LVNTFMILTV TDMKDKRNLT EFRQLVYCSA VKNFKHIHTV 180
  181 YAIILAFSDA ICLGLMVCTS GSMVLFLVKH KQKVQYIHRS LATKSFNETK ATQSICMLVS 240
  241 SFVVLYGTSF ILMMYFSFQD GTDTWLVSVN VAMSACFPAL CPFLLTRNYT RVFKLCSI

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.78
Transmembrane Helix	12	36	0.84
Cytoplasmic	37	49	0.71
Transmembrane Helix	50	69	0.76
Non-Cytoplasmic	70	92	0.78
Transmembrane Helix	93	112	0.89
Cytoplasmic	113	126	0.90
Transmembrane Helix	127	150	0.85
Non-Cytoplasmic	151	182	0.95
Transmembrane Helix	183	208	0.87
Cytoplasmic	209	233	0.91
Transmembrane Helix	234	256	0.89
Non-Cytoplasmic	257	264	0.84
Transmembrane Helix	265	286	0.92
Cytoplasmic	287	298	0.93