YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SL9A1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.50
Transmembrane Helix	16	35	0.85
Non-Cytoplasmic	36	108	0.61
Transmembrane Helix	109	126	0.71
Cytoplasmic	127	131	0.51
Transmembrane Helix	132	154	0.80
Non-Cytoplasmic	155	163	0.65
Transmembrane Helix	164	183	0.92
Cytoplasmic	184	191	0.73
Transmembrane Helix	192	215	0.90
Non-Cytoplasmic	216	227	0.71
Transmembrane Helix	228	250	0.87
Cytoplasmic	251	257	0.76
Transmembrane Helix	258	281	0.78
Non-Cytoplasmic	282	295	0.78
Transmembrane Helix	296	320	0.89
Cytoplasmic	321	326	0.73
Transmembrane Helix	327	345	0.75
Non-Cytoplasmic	346	350	0.65
Transmembrane Helix	351	371	0.88
Cytoplasmic	372	385	0.92
Transmembrane Helix	386	409	0.85
Non-Cytoplasmic	410	416	0.76
Transmembrane Helix	417	440	0.92
Cytoplasmic	441	453	0.90
Transmembrane Helix	454	473	0.83
Non-Cytoplasmic	474	482	0.68
Transmembrane Helix	483	503	0.90
Cytoplasmic	504	820	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMLRWSGVWG FHPPRIFPSL LVVVALVGLL PVLRSHGLQH SPTASTIRGS EPPRERSIGD  60
   61 VTTAPSEPLH RPDDHNLTNL IIEHGGKPSR KAFPVLDIDY PHVRTPFEIS LWILLACLMK 120
  121 IGFHVIPTIS SIVPESCLLI VVGLLVGGLI KGVGETPPFL QSDVFFLFLL PPIILDAGYF 180
  181 LPLRQFTENL GTILIFAVVG TLWNAFFLGG LLYAVCLVGG EQINNIGLLD TLLFGSIISA 240
  241 VDPVAVLAVF EEIHINELLH ILVFGESLLN DAVTVVLYHL FEEFASYDSV GISDIFLGFL 300
  301 SFFVVALGGV FVGVVYGVIA AFTSRFTSHI RVIEPLFVFL YSYMAYLSAE LFHLSGIMAL 360
  361 IASGVVMRPY VEANISHKSH TTIKYFLKMW SSVSETLIFI FLGVSTVAGS HQWNWTFVIS 420
  421 TLLFCLIARV LGVLVLTWFI NKFRIVKLTP KDQFIIAYGG LRGAIAFSLG YLLDKKHFPM 480
  481 CDLFLTAIIT VIFFTVFVQG MTIRPLVDLL AVKKKQETKR SINEEIHTQF LDHLLTGIED 540
  541 ICGHYGHHHW KDKLNRFNKK YVKKCLIAGE RSKEPQLIAF YHKMEMKQAI ELVESGGMGK 600
  601 IPSAVSTVSM QNIHPKAVTS DRILPALSKD KEEEIRKILR SNLQKTRQRL RSYNRHTLVA 660
  661 DPYEEAWNQM LLRRQKARQL EQKITNYLTV PAHKLDSPTL SRARIGSDPL AYEPKADLPV 720
  721 ITIDPASPQS PESVDLVNEE LKGKVLGLNR GPRVTPEEEE EDEDGIIMIR SKEPSSPGTD 780
  781 DVFTPGSSDS PSSQRIQRCL SDPGPHPEPG EGEPFIPKGQ