YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BKRB1_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASQASLKLQ PSNQSQQAPP NITSCEGAPE AWDLLCRVLP GFVITVCFFG LLGNLLVLSF  60
   61 FLLPWRRWWQ QRRQRLTIAE IYLANLAASD LVFVLGLPFW AENVGNRFNW PFGSDLCRVV 120
  121 SGVIKANLFI SIFLVVAISQ DRYRLLVYPM TSWGNRRRRQ AQVTCLLIWV AGGLLSTPTF 180
  181 LLRSVKVVPD LNISACILLF PHEAWHFVRM VELNVLGFLL PLAAILYFNF HILASLRGQK 240
  241 EASRTRCGGP KDSKTMGLIL TLVASFLVCW APYHFFAFLD FLVQVRVIQD CFWKELTDLG 300
  301 LQLANFFAFV NSCLNPLIYV FAGRLFKTRV LGTL

Type	Start	End	Confidence
Non-Cytoplasmic	1	40	0.97
Transmembrane Helix	41	63	0.94
Cytoplasmic	64	80	0.88
Transmembrane Helix	81	101	0.94
Non-Cytoplasmic	102	120	0.88
Transmembrane Helix	121	140	0.92
Cytoplasmic	141	160	0.91
Transmembrane Helix	161	182	0.91
Non-Cytoplasmic	183	214	0.92
Transmembrane Helix	215	234	0.95
Cytoplasmic	235	254	0.93
Transmembrane Helix	255	276	0.93
Non-Cytoplasmic	277	302	0.93
Transmembrane Helix	303	323	0.89
Cytoplasmic	324	334	0.86