YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ERD23_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVFRILGDL SHLLAMILLL VKIWRSKSCA GISGKSQILF ALVFTTRYLD LFSNFISIYN  60
   61 TVMKVVFLLC AYVTVYMIYW KFRKTFDIEN DTFRLEFLLV PVTGLSFLVN YSYTPMEVLW 120
  121 TFSIYLESVA ILPQLFMISK TGEAETITTH YLFFLGLYRL LYLANWIRRY QTENFYDQIS 180
  181 VVSGVVQTIF YCDFFYLYVT KVLKGKKLSL PVPV

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.51
Transmembrane Helix	6	24	0.60
Cytoplasmic	25	30	0.60
Transmembrane Helix	31	49	0.68
Non-Cytoplasmic	50	60	0.64
Transmembrane Helix	61	80	0.92
Cytoplasmic	81	91	0.90
Transmembrane Helix	92	113	0.84
Non-Cytoplasmic	114	118	0.75
Transmembrane Helix	119	138	0.68
Cytoplasmic	139	146	0.64
Transmembrane Helix	147	167	0.79
Non-Cytoplasmic	168	178	0.61
Transmembrane Helix	179	199	0.61
Cytoplasmic	200	214	0.79