YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBAC2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTSTGSSGL YKAPLSKSLL LVPSALSLLL TLLLPHCQKF FVYDLHAVKH DLQIWRLICG  60
   61 RIICLDLKDA FCSGLLIYNF RIFERRYGSR KFASFLLGSW VLSALFDFIL VEAVQYSLGV 120
  121 TVASNLPSGF LAPVFALFVP FHCSIPRVQV AQILGPLSIT NKTLIYILGL QLFTSGSYIW 180
  181 IVAMSGLISG MCYDRKVLQV HQVLRIPGRM AEFFSWALEP IFSSSEPTSE ARVGMGATVD 240
  241 IQRQQRMEQL DRQLMLSQFA QVRRQRQQQG GMINWNRLFP PLRQRRNINY QDGPRSEQRA 300
  301 SPPLEVSEEQ VARLMEMGFS RGDALEALRA SNNDLNVATN FLLQH

Type	Start	End	Confidence
Cytoplasmic	1	18	0.44
Transmembrane Helix	19	38	0.51
Non-Cytoplasmic	39	57	0.63
Transmembrane Helix	58	78	0.44
Cytoplasmic	79	91	0.67
Transmembrane Helix	92	111	0.89
Non-Cytoplasmic	112	122	0.62
Transmembrane Helix	123	145	0.76
Cytoplasmic	146	162	0.58
Transmembrane Helix	163	188	0.75
Non-Cytoplasmic	189	345	0.63