YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|19353113
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKGKVDTR GKKQIFEENK ETLKFYLRII LGANAIYCLV TLVFFYSSAS FWAWMALGFS  60
   61 LAVYGASYHS MSSMARASFS EDGSLMDGGM DLNMEQGMAE HLKDVILLTA IVQVLSCFSL 120
  121 YIWSFWLLAP GRALYLLWVN VLGPWFTADS GAPAPELNEK RQRRQERRQM KRL

Type	Start	End	Confidence
Cytoplasmic	1	24	0.97
Transmembrane Helix	25	45	0.93
Non-Cytoplasmic	46	50	0.77
Transmembrane Helix	51	71	0.89
Cytoplasmic	72	104	0.95
Transmembrane Helix	105	127	0.91
Non-Cytoplasmic	128	133	0.83
Transmembrane Helix	134	154	0.87
Cytoplasmic	155	173	0.87