YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACO2_MOUSE, ACOD...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAHILQEIS GAYSATTTIT APPSGGQQNG GEKFEKSSHH WGADVRPELK DDLYDPTYQD  60
   61 DEGPPPKLEY VWRNIILMAL LHLGALYGIT LVPSCKLYTC LFAYLYYVIS ALGITAGAHR 120
  121 LWSHRTYKAR LPLRLFLIIA NTMAFQNDVY EWARDHRAHH KFSETHADPH NSRRGFFFSH 180
  181 VGWLLVRKHP AVKEKGGKLD MSDLKAEKLV MFQRRYYKPD LLLMCFVLPT LVPWYCWGET 240
  241 FVNSLCVSTF LRYAVVLNAT WLVNSAAHLY GYRPYDKNIS SRENILVSMG AVGERFHNYH 300
  301 HAFPYDYSAS EYRWHINFTT FFIDCMALLG LAYDRKRVSR AAVLARIKRT GDGSCKSG

Type	Start	End	Confidence
Cytoplasmic	1	73	0.97
Transmembrane Helix	74	92	0.93
Non-Cytoplasmic	93	101	0.73
Transmembrane Helix	102	122	0.94
Cytoplasmic	123	218	0.91
Transmembrane Helix	219	238	0.83
Non-Cytoplasmic	239	313	0.52
Transmembrane Helix	314	333	0.59
Cytoplasmic	334	358	0.87