YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S29A4_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.99
Transmembrane Helix	67	89	0.87
Non-Cytoplasmic	90	107	0.84
Transmembrane Helix	108	127	0.93
Cytoplasmic	128	135	0.92
Transmembrane Helix	136	158	0.90
Non-Cytoplasmic	159	165	0.79
Transmembrane Helix	166	188	0.83
Cytoplasmic	189	200	0.73
Transmembrane Helix	201	220	0.85
Non-Cytoplasmic	221	230	0.76
Transmembrane Helix	231	252	0.93
Cytoplasmic	253	346	0.95
Transmembrane Helix	347	366	0.90
Non-Cytoplasmic	367	380	0.73
Transmembrane Helix	381	401	0.86
Cytoplasmic	402	411	0.77
Transmembrane Helix	412	434	0.86
Non-Cytoplasmic	435	444	0.70
Transmembrane Helix	445	466	0.88
Cytoplasmic	467	481	0.80
Transmembrane Helix	482	501	0.63
Non-Cytoplasmic	502	528	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSIGSQRLK EPCVAATSDQ SVVTSFSFDN FQLETTAEGA QDPGIRVRGV PTFTDSAVEE  60
   61 PVPDDRYHAI YFAMLLAGVG FLLPYNSFIT DVDYLHHKYP GTSIVFDMSL TYILVALAAV 120
  121 LLNNVVVERL NLHTRITTGY LLALGPLLFI SICDVWLQLF SHDQAYAINL AAVGTVAFGC 180
  181 TVQQSSFYGY TGLLPKRYTQ GVMTGESTAG VMISLSRILT KLLLPDERAS TIIFFLVSAG 240
  241 LELLCFLLHL LVRRSRFVLY YTTRPRDSRP VQAGYRVHHD VASGDIHFEH QTPALSSSRS 300
  301 PKESPAHEVT HSNSGVYMRF DVPRPRVKRS WPTFRALLLH RYVVARVIWA DMLSIAVTYF 360
  361 ITLCLFPGLE SEIRHCVLGE WLPILVMAVF NLSDFVGKIL AALPVEWRGT HLLACSCLRV 420
  421 VFIPLFILCV YPSGMPALRH PAWPCVFSLL MGISNGYFGS VPMILAAGKV SPKQRELAGN 480
  481 TMTVSYMSGL TLGSAVAYCT YSLTRDAHGS CFQTATAAAA NDSIPVGP