YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|148681353, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQALSLWFL LGWIGGDSCN LIGSFLADQL PLQTYTAVYY VLADLMMLTL YFHYKFKKRP  60
   61 SPLSAPINSV LLFILGTVCI TPLLSSTDPV AVPREGFRGR TLLSVEPGNK PFTKKEVIGF 120
  121 VIGSASSLLY LLSRLPQIRT NFIRQSTQGI SYSLFALVML GNTLYGLSVL LKNPEVGQSE 180
  181 GSYLLHHLPW LVGSLGVLLL DTIISIQFLV YRSHETAAAS EREPLLPS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	27	0.91
Non-Cytoplasmic	28	34	0.83
Transmembrane Helix	35	54	0.93
Cytoplasmic	55	64	0.86
Transmembrane Helix	65	85	0.91
Non-Cytoplasmic	86	116	0.90
Transmembrane Helix	117	133	0.95
Cytoplasmic	134	148	0.82
Transmembrane Helix	149	169	0.92
Non-Cytoplasmic	170	187	0.87
Transmembrane Helix	188	211	0.88
Cytoplasmic	212	228	0.97