YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TR143_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTPTLIFI IIFYLVSLAS MLQNGFMMIV LGREWMRNRT LPAADMIVAS LASSRFCLHG  60
   61 IAILANLLAS FDFCYQANLI GILWDFTNTL IFWLTAWLAI FYCVKISSFS HPVLFWLKWR 120
  121 ISQLVPRLLV VSLIIGGLSA VISATGNFMA NQMTISQGFH GNCTFGHMSL DFYRYYYLYH 180
  181 SVLMWFTPFF LFLVSVIVLM FSLYQHVEKM RGHRPGPWDL HTQAHTMALK SLTFFFIFYI 240
  241 FFFLALVISS TKRKSMQSYY WAREAIIYTG IFLNSIILLF SNPKLRKALK MRF

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.95
Transmembrane Helix	7	31	0.90
Cytoplasmic	32	50	0.82
Transmembrane Helix	51	71	0.82
Non-Cytoplasmic	72	88	0.76
Transmembrane Helix	89	109	0.85
Cytoplasmic	110	124	0.84
Transmembrane Helix	125	149	0.85
Non-Cytoplasmic	150	181	0.95
Transmembrane Helix	182	205	0.90
Cytoplasmic	206	226	0.93
Transmembrane Helix	227	248	0.90
Non-Cytoplasmic	249	264	0.77
Transmembrane Helix	265	282	0.95
Cytoplasmic	283	293	0.89