YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NY4R_MOUSE, NPY4...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTSHFLAPL FPGSLQGKNG TNPLDSPYNF SDGCQDSAEL LAFIITTYSI ETILGVLGNL  60
   61 CLIFVTTRQK EKSNVTNLLI ANLAFSDFLM CLICQPLTVT YTIMDYWIFG EVLCKMLTFI 120
  121 QCMSVTVSIL SLVLVALERH QLIINPTGWK PSIFQAYLGI VVIWFISCFL SLPFLANSTL 180
  181 NDLFHYNHSK VVEFLEDKVV CFVSWSSDHH RLIYTTFLLL FQYCIPLAFI LVCYIRIYQR 240
  241 LQRQKHVFHA HACSSRAGQM KRINSMLMTM VTAFAVLWLP LHVFNTLEDW YQEAIPACHG 300
  301 NLIFLMCHLL AMASTCVNPF IYGFLNINFK KDIKALVLTC HCRSPQGESE HLPLSTVHTD 360
  361 LSKGSMRMGS KSNFI

Type	Start	End	Confidence
Non-Cytoplasmic	1	43	0.79
Transmembrane Helix	44	66	0.75
Cytoplasmic	67	77	0.87
Transmembrane Helix	78	99	0.89
Non-Cytoplasmic	100	116	0.79
Transmembrane Helix	117	137	0.95
Cytoplasmic	138	153	0.94
Transmembrane Helix	154	176	0.92
Non-Cytoplasmic	177	212	0.97
Transmembrane Helix	213	235	0.92
Cytoplasmic	236	262	0.93
Transmembrane Helix	263	284	0.89
Non-Cytoplasmic	285	301	0.91
Transmembrane Helix	302	325	0.88
Cytoplasmic	326	375	0.98