YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMFR_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.95
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLFLERFP WPSLRTYTGL SGLALLGTIV SAYRALSQPE DGSGEPEPLT APLQPEALAP  60
   61 ARLTAGGPRA RDVAQYLLSD SLFVWVLVNT ACCVLMLVAK LIQCIVFGPL RVSERQHLKD 120
  121 KFWNFIFYKF IFIFGVLNVQ TVEEVVMWCL WFAGLVFLHL MVQLCKDRFE YLSFSPTTPM 180
  181 SSHGRVLSLL IAMLLSCCGL AVVCCVTGYT HGMHTLAFMA AESLLVTVRT AHVILRYVIH 240
  241 LWDLNHEGTW EGKGTYVYYT DFVMELALLS LDLMHHIHML LFGNIWLSMA SLVIFMQLRY 300
  301 LFHEVQRRIR RHKNYLRVVG NMEARFAVAT PEELAVNNDD CAICWDSMQA ARKLPCGHLF 360
  361 HNSCLRSWLE QDTSCPTCRM SLNIADGSRA REDHQGENLD ENLVPVAAAE GRPRLNQHNH 420
  421 FFHFDGSRIA SWLPSFSVEV MHTTNILGIT QASNSQLNAM AHQIQEMFPQ VPYHLVLQDL 480
  481 QMTRSVEITT DNILEGRIQV PFPTQRSDSL RPALNSPVER PSPDLEEGEA SVQTERVPLD 540
  541 LSPRLEETLD FSEVELEPIE VEDFEARGSR FSKSADERQR MLVQRKDDLL QQARKRFLNK 600
  601 SSEDDGASER LLPSEGTSSD PVTLRRRMLA AAAERRLQRQ RTT

Type	Start	End	Confidence
Cytoplasmic	1	15	0.84
Transmembrane Helix	16	36	0.87
Non-Cytoplasmic	37	81	0.98
Transmembrane Helix	82	104	0.89
Cytoplasmic	105	121	0.89
Transmembrane Helix	122	141	0.88
Non-Cytoplasmic	142	146	0.75
Transmembrane Helix	147	165	0.90
Cytoplasmic	166	185	0.88
Transmembrane Helix	186	210	0.92
Non-Cytoplasmic	211	279	0.50
Transmembrane Helix	280	302	0.89
Cytoplasmic	303	643	0.73