YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MTR1B_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENSSIPNC CEASGLAARP SWSGSAGARP PVTARAPWVA PMLSTVVVVT TAVDFVGNLL  60
   61 VILSVLRNRK LRNAGNLFVV SLALADLVIA LYPYPLILVA IIRDGWVLGE AHCKASAFVM 120
  121 GLSVIGSVFN ITAIAINRYC CICHSTTYHR VCSHWYTPIY ISLVWLLTLV ALVPNFFVGS 180
  181 LEYDPRIYSC TFIQTASTQY TAAVVAIHFL LPMAVVSFCY LRIWVLVLQA RRKAKATRKL 240
  241 RLRPSDLRSF LTMFAVFVVF AICWAPLNCI GLAVAINPEA MALQVPEGLF VTSYFLAYFN 300
  301 SCLNAIVYGL LNQNFRREYK RILLAIWNTR RCIQHASKHC LTEERQGPTP PAARATVPVK 360
  361 EGAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.86
Transmembrane Helix	42	63	0.84
Cytoplasmic	64	74	0.81
Transmembrane Helix	75	97	0.89
Non-Cytoplasmic	98	114	0.87
Transmembrane Helix	115	136	0.89
Cytoplasmic	137	154	0.81
Transmembrane Helix	155	178	0.85
Non-Cytoplasmic	179	203	0.95
Transmembrane Helix	204	226	0.92
Cytoplasmic	227	246	0.93
Transmembrane Helix	247	274	0.83
Non-Cytoplasmic	275	289	0.92
Transmembrane Helix	290	311	0.90
Cytoplasmic	312	364	0.97