YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1C_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	124	0.97
Transmembrane Helix	125	147	0.88
Non-Cytoplasmic	148	163	0.93
Transmembrane Helix	164	185	0.92
Cytoplasmic	186	194	0.83
Transmembrane Helix	195	215	0.87
Non-Cytoplasmic	216	265	0.89
Transmembrane Helix	266	286	0.92
Cytoplasmic	287	345	0.94
Transmembrane Helix	346	366	0.86
Non-Cytoplasmic	367	381	0.88
Transmembrane Helix	382	404	0.92
Cytoplasmic	405	523	0.98
Transmembrane Helix	524	543	0.94
Non-Cytoplasmic	544	585	0.77
Transmembrane Helix	586	606	0.57
Cytoplasmic	607	650	0.77
Transmembrane Helix	651	673	0.88
Non-Cytoplasmic	674	723	0.85
Transmembrane Helix	724	745	0.86
Cytoplasmic	746	899	0.97
Transmembrane Helix	900	919	0.91
Non-Cytoplasmic	920	937	0.87
Transmembrane Helix	938	959	0.59
Cytoplasmic	960	968	0.54
Transmembrane Helix	969	991	0.79
Non-Cytoplasmic	992	1022	0.57
Transmembrane Helix	1023	1051	0.67
Cytoplasmic	1052	1141	0.55
Transmembrane Helix	1142	1167	0.85
Non-Cytoplasmic	1168	1219	0.67
Transmembrane Helix	1220	1242	0.85
Cytoplasmic	1243	1250	0.58
Transmembrane Helix	1251	1273	0.86
Non-Cytoplasmic	1274	1358	0.58
Transmembrane Helix	1359	1378	0.93
Cytoplasmic	1379	1452	0.68
Transmembrane Helix	1453	1476	0.88
Non-Cytoplasmic	1477	2139	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNENTRMYV PEENHQGSNY GSPRPAHANM NANAAAGLAP EHIPTPGAAL SWQAAIDAAR  60
   61 QAKLMGSAGN ATISTVSSTQ RKRQQYGKPK KQGGTTATRP PRALLCLTLK NPIRRACISI 120
  121 VEWKPFEIII LLTIFANCVA LAIYIPFPED DSNATNSNLE RVEYLFLIIF TVEAFLKVIA 180
  181 YGLLFHPNAY LRNGWNLLDF IIVVVGLFSA ILEQATKADG ANALGGKGAG FDVKALRAFR 240
  241 VLRPLRLVSG VPSLQVVLNS IIKAMVPLLH IALLVLFVII IYAIIGLELF MGKMHKTCYN 300
  301 QEGIIDVPAE EDPSPCALET GHGRQCQNGT VCKPGWDGPK HGITNFDNFA FAMLTVFQCI 360
  361 TMEGWTDVLY WMQDAMGYEL PWVYFVSLVI FGSFFVLNLV LGVLSGEFSK EREKAKARGD 420
  421 FQKLREKQQL EEDLKGYLDW ITQAEDIDPE NEDEGMDEDK PRNMSMPTSE TESVNTENVA 480
  481 GGDIEGENCG ARLAHRISKS KFSRYWRRWN RFCRRKCRAA VKSNVFYWLV IFLVFLNTLT 540
  541 IASEHYNQPH WLTEVQDTAN KALLALFTAE MLLKMYSLGL QAYFVSLFNR FDCFIVCGGI 600
  601 LETILVETKI MSPLGISVLR CVRLLRIFKI TRYWNSLSNL VASLLNSVRS IASLLLLLFL 660
  661 FIIIFSLLGM QLFGGKFNFD EMQTRRSTFD NFPQSLLTVF QILTGEDWNS VMYDGIMAYG 720
  721 GPSFPGMLVC IYFIILFICG NYILLNVFLA IAVDNLADAE SLTSAQKEEE EEKERKKLAR 780
  781 TASPEKKQEV MEKPAVEESK EEKIELKSIT ADGESPPTTK INMDDLQPSE NEDKSPHSNP 840
  841 DTAGEEDEEE PEMPVGPRPR PLSELHLKEK AVPMPEASAF FIFSPNNRFR LQCHRIVNDT 900
  901 IFTNLILFFI LLSSISLAAE DPVQHTSFRN HILGNADYVF TSIFTLEIIL KMTAYGAFLH 960
  961 KGSFCRNYFN ILDLLVVSVS LISFGIQSSA INVVKILRVL RVLRPLRAIN RAKGLKHVVQ1020
 1021 CVFVAIRTIG NIVIVTTLLQ FMFACIGVQL FKGKLYTCSD SSKQTEAECK GNYITYKDGE1080
 1081 VDHPIIQPRS WENSKFDFDN VLAAMMALFT VSTFEGWPEL LYRSIDSHTE DKGPIYNYRV1140
 1141 EISIFFIIYI IIIAFFMMNI FVGFVIVTFQ EQGEQEYKNC ELDKNQRQCV EYALKARPLR1200
 1201 RYIPKNQHQY KVWYVVNSTY FEYLMFVLIL LNTICLAMQH YGQSCLFKIA MNILNMLFTG1260
 1261 LFTVEMILKL IAFKPKGYFS DPWNVFDFLI VIGSIIDVIL SETNPAEHTQ CSPSMSAEEN1320
 1321 SRISITFFRL FRVMRLVKLL SRGEGIRTLL WTFIKSFQAL PYVALLIVML FFIYAVIGMQ1380
 1381 VFGKIALNDT TEINRNNNFQ TFPQAVLLLF RCATGEAWQD IMLACMPGKK CAPESEPSNS1440
 1441 TEGETPCGSS FAVFYFISFY MLCAFLIINL FVAVIMDNFD YLTRDWSILG PHHLDEFKRI1500
 1501 WAEYDPEAKG RIKHLDVVTL LRRIQPPLGF GKLCPHRVAC KRLVSMNMPL NSDGTVMFNA1560
 1561 TLFALVRTAL RIKTEGNLEQ ANEELRAIIK KIWKRTSMKL LDQVVPPAGD DEVTVGKFYA1620
 1621 TFLIQEYFRK FKKRKEQGLV GKPSQRNALS LQAGLRTLHD IGPEIRRAIS GDLTAEEELD1680
 1681 KAMKEAVSAA SEDDIFRRAG GLFGNHVTYY QSDSRGNFPQ TFATQRPLHI NKTGNNQADT1740
 1741 ESPSHEKLVD STFTPSSYSS TGSNANINNA NNTALGRFPH PAGYSSTVST VEGHGPPLSP1800
 1801 AVRVQEAAWK LSSKRCHSRE SQGATVNQEI FPDETRSVRM SEEAEYCSEP SLLSTDMFSY1860
 1861 QEDEHRQLTC PEEDKREIQP SPKRSFLRSA SLGRRASFHL ECLKRQKDQG GDISQKTALP1920
 1921 LHLVHHQALA VAGLSPLLQR SHSPTTFPRP CPTPPVTPGS RGRPLRPIPT LRLEGAESSE1980
 1981 KLNSSFPSIH CSSWSEETTA CSGSSSMARR ARPVSLTVPS QAGAPGRQFH GSASSLVEAV2040
 2041 LISEGLGQFA QDPKFIEVTT QELADACDMT IEEMENAADN ILSGGAQQSP NGTLLPFVNC2100
 2101 RDPGQDRAVA PEDESCAYAL GRGRSEEALA DSRSYVSNL