YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120969509
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.92
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAALLLSLL EANCSLALAE ELLLDGWGEP PDPEGPYSYC NTTLDQIGTC WPQSAPGALV  60
   61 ERPCPEYFNG IKYNTTRNAY RECLENGTWA SRINYSHCEP ILDDKQRKYD LHYRIALIIN 120
  121 YLGHCVSVVA LVAAFLLFLV LRSIRCLRNV IHWNLITTFI LRNITWFLLQ LIDHEVHEGN 180
  181 EVWCRCVTTI FNYFVVTNFF WMFVEGCYLH TAIVMTYSTE HLRKWLFLFI GWCEGP

Type	Start	End	Confidence
Signal Peptide	1	19	0.90
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	119	0.95
Transmembrane Helix	120	141	0.93
Cytoplasmic	142	149	0.88
Transmembrane Helix	150	169	0.90
Non-Cytoplasmic	170	198	0.80
Transmembrane Helix	199	218	0.82
Cytoplasmic	219	236	0.89