YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TMM56_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEASTKAAVG SGAMEASTKA VICTVCSSFV VFQILFHFVS YWFSARVSSG YNSLSIDKKI  60
   61 EWNSRVVSTC HSLLVGIFGL YLFFFDEATI TDPLWGDPTY VNINIATASG YLISDLLIIL 120
  121 FNWKVIGDKF FIIHHCAGLT AYYFVLTTGA LAYIANFRLL AELSSPFVNQ RWFFEALKYP 180
  181 KFSKANVING ILMTVVFFIV RIISIPPMYF FLYSVYGTEP YIRFGFVIQS VWIVTCVILD 240
  241 VMNIMWMIKI TKGCIKVISL IRQEKAKDSL QNGKLD

Type	Start	End	Confidence
Cytoplasmic	1	19	0.69
Transmembrane Helix	20	41	0.91
Non-Cytoplasmic	42	64	0.64
Transmembrane Helix	65	85	0.87
Cytoplasmic	86	99	0.57
Transmembrane Helix	100	121	0.79
Non-Cytoplasmic	122	130	0.67
Transmembrane Helix	131	157	0.75
Cytoplasmic	158	184	0.81
Transmembrane Helix	185	205	0.88
Non-Cytoplasmic	206	224	0.75
Transmembrane Helix	225	246	0.88
Cytoplasmic	247	276	0.93