YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTN2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQVLPVFAH CKEAPSTASS TPDSTEGGND DSDFRELHTA REFSEDEEEE TTSQDWGTPR  60
   61 ELTFSYIAFD GVVGSGGRRD SVVRRPRPQG RSVSEPRDPP QQSGLGDSLE SIPSLSQSPE 120
  121 PGRRGDPDPV PPAERPLEEL RLRLDQLGWV VRSAGSGEDS ATSSSTPLEN EEPDGLEASE 180
  181 AGEETNLELR LAQSLHLQLE VLTPQLSPSS GTPQAHTPSP QRSQDSNSGP DDEPLLNVVE 240
  241 EHWRLLEQEP ITAQCLDSTD QSEFMLEPLL LVADLLYWKD TRTSGAVFTG LMASLLCLLH 300
  301 FSIVSVAAHL ALLGLCATIS LRVYRKVLQA VHRGDGTNPF QAYLDMDLTL TREQTERLSQ 360
  361 QIASHVVSTA TQLRHFFLVE DLVDSLKLAL LFYILTFVGA IFNGLTLVIL GVVALFTVPL 420
  421 LYRQHQAQID QYVGLVTNQL SHIKAKIRAK IPGTGTLAPT ASVSGSKAKA E

Type	Start	End	Confidence
Cytoplasmic	1	284	0.51
Transmembrane Helix	285	304	0.67
Non-Cytoplasmic	305	305	0.28
Transmembrane Helix	306	324	0.65
Cytoplasmic	325	391	0.68
Transmembrane Helix	392	418	0.87
Non-Cytoplasmic	419	471	0.65