YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CKLF8_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQQRARSH TVTTTTSSFA ENFSTTSSSF AYDREFLRTP PGLLIVAEIV LGLLVWTLIA  60
   61 GTEYFRVPAF GWVMFVAVFY WVLTVFFLIV YITLTYTRIP QVPWTTVGLC FNGSAFVLYF 120
  121 SAAIVDASSV SPEKEGHNFN SWAASSFFAF LVTICYAGNT YFSFIAWRSR TAQ

Type	Start	End	Confidence
Cytoplasmic	1	40	0.96
Transmembrane Helix	41	60	0.94
Non-Cytoplasmic	61	70	0.76
Transmembrane Helix	71	94	0.89
Cytoplasmic	95	101	0.87
Transmembrane Helix	102	125	0.87
Non-Cytoplasmic	126	142	0.91
Transmembrane Helix	143	165	0.89
Cytoplasmic	166	173	0.89