YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX10_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	161	0.94
Transmembrane Helix	162	181	0.87
Non-Cytoplasmic	182	187	0.74
Transmembrane Helix	188	209	0.89
Cytoplasmic	210	229	0.88
Transmembrane Helix	230	249	0.95
Non-Cytoplasmic	250	256	0.66
Transmembrane Helix	257	276	0.83
Cytoplasmic	277	280	0.84
Transmembrane Helix	281	302	0.80
Non-Cytoplasmic	303	307	0.65
Transmembrane Helix	308	330	0.76
Cytoplasmic	331	354	0.76
Transmembrane Helix	355	373	0.78
Non-Cytoplasmic	374	377	0.67
Transmembrane Helix	378	400	0.82
Cytoplasmic	401	409	0.84
Transmembrane Helix	410	428	0.71
Non-Cytoplasmic	429	443	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPHTISS RLLTGSVGGC IWYLERRAIQ GLPHRVTRLF RNVSNQWVTL QHLSFLKRMY  60
   61 VTQLHRGLSQ RVKPKPEPPA SPFLEHTSSG QARADEDELP SFPAPSRPLS RKPNEELVEL 120
  121 EATSIVDHSL DTAKEKKEER QWKEMKLHTD DLPGILARLS KIKLTALVVS TTSAGFALAP 180
  181 GPFDWSCFLL TSLGTGLASC AANSINQFFE VPFDSNMNRT KNRPLVRGQI SPLLAVSFAT 240
  241 CCAVPGVALL TWGVNPLTGA LGVFNIFLYT CCYTPLKRVS ITNTWVGAVV GAIPPVMGWT 300
  301 AATGSLDAGA LLLGGILYSW QFPHFNALSW GLREDYSRGG YCMMSVTHPA LCRRVALRHC 360
  361 LALIALSTAA PVLDITTWVF PVISLPINLY ISYLGFRFYV DADRRSSRKL FFCSLWHLPL 420
  421 LLLLMLTCKQ RPGQEGDKGE APS