YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RAE1E_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKAAVTKRH HFMIQKLLIL LSYGYTNGLD DAHSLRCNLT IKDPTSADLP WCDVKCSVDE  60
   61 ITILHLNNIN KTMTSGDPGK MANATGKCLT QPLNDLCQEL RDKVSNTKVD THKTNGYPHL 120
  121 QVTMIYPQSQ GQTPSATWEF NISDSYFFTF YTENMSWRSA NDESGVIMNK WKDDGDLVQQ 180
  181 LKYFIPQCRQ KIDEFLKQSK EKPRSTSRSP SITQLTSTSP LPPPSHSTSK KGFISVGLIF 240
  241 ISLLFAFAFA M

Type	Start	End	Confidence
Cytoplasmic	1	231	0.57
Transmembrane Helix	232	250	0.94
Non-Cytoplasmic	251	251	0.59