YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12839776, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTNTSTTTT ATVARSISSF TDPHHFPSHN HIIRMASASQ GHFDAYEALD LTEFAKKQPW  60
   61 WRKLFGQESR SAGEKYSVAT QLLIGGVTGW CTGFIFQKVG KLAATAVGGG FFLLQLANHT 120
  121 GYIKVDWSRV EKDMKKAKEQ LTIRKSAQIP TEVKSKAEEV VCFVKKNVLV TGGFFGGFLL 180
  181 GMAS

Type	Start	End	Confidence
Cytoplasmic	1	76	0.78
Transmembrane Helix	77	96	0.67
Non-Cytoplasmic	97	101	0.78
Transmembrane Helix	102	122	0.67
Cytoplasmic	123	162	0.76
Transmembrane Helix	163	182	0.47
Non-Cytoplasmic	183	184	0.57