YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACM2_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNSTNSSNN GLAITSPYKT FEVVFIVLVA GSLSLVTIIG NILVMVSIKV NRHLQTVNNY  60
   61 FLFSLACADL IIGVFSMNLY TLYTVIGYWP LGPVVCDLWL ALDYVVSNAS VMNLLIISFD 120
  121 RYFCVTKPLT YPVKRTTKMA GMMIAAAWVL SFILWAPAIL FWQFIVGVRT VEDGECYIQF 180
  181 FSNAAVTFGT AIAAFYLPVI IMTVLYWHIS RASKSRIKKE KKEPVANQDP VSPSLVQGRI 240
  241 VKPNNNNMPG GDGGLEHNKI QNGKALRDGG TENCVQGEEK ESSNDSTSVS AVASNMRDDE 300
  301 ITQDENTVST SLGHSKDDNS RQTCIKIVTK TQKGDACTPT STTVELVGSS GQNGDEKQNI 360
  361 VARKIVKMTK QPAKKKPPPS REKKVTRTIL AILLAFIITW APYNVMVLIN TFCAPCIPNT 420
  421 VWTIGYWLCY INSTINPACY ALCNATFKKT FKHLLMCHYK NIGATR

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.93
Transmembrane Helix	23	45	0.92
Cytoplasmic	46	59	0.82
Transmembrane Helix	60	82	0.90
Non-Cytoplasmic	83	99	0.83
Transmembrane Helix	100	119	0.86
Cytoplasmic	120	139	0.83
Transmembrane Helix	140	161	0.89
Non-Cytoplasmic	162	186	0.87
Transmembrane Helix	187	209	0.93
Cytoplasmic	210	384	0.99
Transmembrane Helix	385	403	0.90
Non-Cytoplasmic	404	423	0.68
Transmembrane Helix	424	444	0.75
Cytoplasmic	445	466	0.84