YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ICAM4_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESALLLPSL LLVAAYPRGG SPQQEWMQSP PAPSVTSAPF WVRLNPELEA VPPGGSAWLN  60
   61 CSHNCPLPVH SSLRTQLRQG KIVNGSGWVS YQLLDVRAWN SKVRCVVTCA GETREATARI 120
  121 TAYKRPRSVI LEPPVLVGHK YTLRCYVTHV FPVGFLVVSL RRGGRVIYHE SLERFTGSDL 180
  181 ANVTLTYVMR AGLNDLWQPL TCHARLNLDG LVVRSSSAPV MLTVLALSPA SIALASTSIA 240
  241 TLVGILLAVG AVYVRKYLAV QT

Type	Start	End	Confidence
Signal Peptide	1	17	0.97
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	231	0.94
Transmembrane Helix	232	254	0.85
Cytoplasmic	255	262	0.86