YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26006105
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YHLVFMCCSV LMLIFMYLYV CVCTCTCAFS LCSTNVVMNY SEIESKVREA TNDDPWGPSG  60
   61 QLMGEIAKAT FMYEQFPELM NMLWSRMLKD NKKNWRRVYK SLLLLAYLIR NGSERVVTSA 120
  121 REHIYDLRSL ENYHFVDEHG KDQGINIRQK VKELVEFAQD DDRLREERKK AKKNKDKYVG 180
  181 VSSDSVGGFR YNERYDPEPK SKWDEEWDKN KSAFPFSDKL GELSDKIGST IDDTISKFRR 240
  241 KDREDSPERC SDSDEEKKAR RGRSPKGEFK DEEETVTTKH IHITQATETT TTRHKRTANP 300
  301 SKTIDLGAAA HYTGDKASPD QNASTHTPQS SAKPSVPSSK SSGDLVDLFD GSSQSAATSG 360
  361 NGDFGDWSAF NQAPSGPVAS GGELFGSAPQ SAVELISASQ PALGPPPAAS NSADLFDLMG 420
  421 SSQATMTSSQ SMNFSLMSTN TVGLGLPMSR SQVSCLFPLG IGAYTSTRRS NSMMS

Type	Start	End	Confidence
Cytoplasmic	1	9	0.73
Transmembrane Helix	10	32	0.78
Non-Cytoplasmic	33	475	0.89