YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PX11C_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLNRLASA LESHRVRDRL IRTLGYCCQL IGGVLVEQCP NRSEVGRRLL VVSAQFNHCR  60
   61 TVLRLFDDLA MFVYTKQYGL GTKEEDIFIR WLSVLSNVTD QLYYPCEHIA WAADAKVLRV 120
  121 DSAWWWTLNT ALWTLSLLLG AVKALWTMLK LRQKLRSPTG TSASQLPRSK RRAMEARICS 180
  181 EVLTLLSNLA DLANAVHWLP RGVLWAGRFP PWLVGLMGTI SSILSTCQAV RAGRQAEADS 240
  241 P

Type	Start	End	Confidence
Cytoplasmic	1	19	0.67
Transmembrane Helix	20	36	0.44
Non-Cytoplasmic	37	124	0.78
Transmembrane Helix	125	147	0.85
Cytoplasmic	148	177	0.85
Transmembrane Helix	178	198	0.76
Non-Cytoplasmic	199	208	0.77
Transmembrane Helix	209	230	0.84
Cytoplasmic	231	241	0.86