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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|27372317
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNEASLEGE GLPEGLAAAA GGAGGSGSAL HPGIPAGMEA DLSQLSEEER RQIAAVMSRA  60
   61 QGLPKGSVPA AAAESPSMHR KQELDSSQAP QQPGKPPDPG RPPQHGLSKS RTTDTFRSEQ 120
  121 KLPGRSPSTI SLKESKSRTD FKEEYKSSMM PGFFSDVNPL SAVSSVVNKF NPFDLISDSE 180
  181 AVQEETTKKQ KVAQKDQGKS EGITKPSLQQ PSPKLIPKQQ GPGKEVIPQD IPSKSVSSQQ 240
  241 AEKTKPQAPG TAKPSQQSPA QTPAQQAKPV AQQPGPAKAT VQQPGPAKSP AQPAGTGKSP 300
  301 AQPPVTAKPP AQQAGLEKTS LQQPGPKSLA QTPGQGKVPP GPAKSPAQQP GTAKLPAQQP 360
  361 GPQTAAKVPG PTKTPAQLSG PGKTPAQQPG PTKPSPQQPI PAKPQPQQPV ATKPQPQQPA 420
  421 PAKPQPQHPT PAKPQPQQPT PAKPQPQQPT PAKPQPQQPT PAKPQPQQPT PAKPQPQQPT 480
  481 PAKPQPQQPG LGKPSAQQPS KSISQTVTGR PLQAPPTSAA QAPAQGLSKT ICPLCNTTEL 540
  541 LLHTPEKANF NTCTECQSTV CSLCGFNPNP HLTEIKEWLC LNCQMQRALG GELAAIPSSP 600
  601 QPTPKAASVQ PATASKSPVP SQQASPKKEL PSKQDSPKAP ESKKPPPLVK QPTLHGPTPA 660
  661 TAPQPPVAEA LPKPAPPKKP SAALPEQAKA PVADVEPKQP KTTETLTDSP SSAAATSKPA 720
  721 ILSSQVQAQA QVTTAPPLKT DSAKTSQSFP PTGDTITPLD SKAMPRPASD SKIVSHPGPT 780
  781 SESKDPVQKK EEPKKAQTKV TPKPDTKPVP KGSPTPSGTR PTTGQATPQS QQPPKPPEQS 840
  841 RRFSLNLGGI ADAPKSQPTT PQETVTGKLF GFGASIFSQA SNLISTAGQQ APHPQTGPAA 900
  901 PSKQAPPPSQ TLAAQGPPKS TGQHPSAPAK TTAVKKETKG PAAENLEAKP VQAPTVKKAE 960
  961 KDKKPPPGKV SKPPPTEPEK AVLAQKPDKT TKPKPACPLC RTELNVGSQD PPNFNTCTEC1020
 1021 KNQVCNLCGF NPTPHLTEIQ EWLCLNCQTQ RAISGQLGDM DKMPPASSGP KASPVPAPAE1080
 1081 PPPQKTPTAA HAKGKKKETE VKAETEKQIP EKETPSIEKT PPAVATDQKL EESEVTKSLV1140
 1141 SVLPEKKPSE EEKALPADKK EKKPPAAEAP PLEEKKPIPD DQKLPPDAKP SASEGEEKRD1200
 1201 LLKAHVQIPE EGPIGKVASL ACEGEQQPDT RPEDLPGATP QTLPKDRQKE SRDVTQPQAE1260
 1261 GTAKEGRGEP SKDRTEKEED KSDTSSSQQP KSPQGLSDTG YSSDGISGSL GEIPSLIPSD1320
 1321 EKDLLKGLKK DSFSQESSPS SPSDLAKLES TVLSILEAQA STLVGEKAEK KTQPQKVSPE1380
 1381 QPQDQQKTQT PSETRDISIS EEEIKESQEK KVTSKKDSAQ GFPSRKEHKE NPELVDDLSP1440
 1441 RRASYDSVED SSESENSPVA RRKRRTSIGS SSSEEYKQED SQGSGEDEDF IRKQIIEMSA1500
 1501 DEDASGSEDE EFIRSQLKEI GGVTESQKRE ETKGKGKSPA GKHRRLTRKS STSFDDDAGR1560
 1561 RHSWHDEDDE TFDESPELKF RETKSQESEE LVVAGGGGLR RFKTIELNST VTDKYSAESS1620
 1621 QKKTTLYFDE EPELEMESLT DSPEDRSRGE GSSSLHASSF TPGTSPTSVS SLDEDSDSSP1680
 1681 SHKKGESKQQ RKARHRSHGP LLPTIEDSSE EEELREEEEL LKEQEKQREL EQQQRKSSSK1740
 1741 KSKKDKDELR AQRRRERPKT PPSNLSPIED ASPTEELRQA AEMEELHRSS CSEYSPSIES1800
 1801 DPEGFEISPE KIIEVQKVYK LPTAVSLYSP TDEQSVMQKE GAQKALKSAE EMYEEMMHKP1860
 1861 HKYKAFPAAN ERDEVFEKEP LYGGMLIEDY IYESLVEDTY NGSVDGSLLT RQDEQNGFMQ1920
 1921 QRGREQKIRL QEQIYDDPMQ KITDLQKEFY ELESLHSIVP QEDIVSSSYI IPESHEIVDL1980
 1981 GSMVTSTSEE KKLLDADAAY EELMKRQQMQ VTDGSSLIQT TMGDDMAEST LDFDRVQDAS2040
 2041 LTSSILSGAS LTDSTSSATL SIPDVKITQH FSTEEFEDEY VTDYTREIQE IIAHESLILT2100
 2101 YSEPSESATS VPPSDTPSLT SSISSVCTTD SSSPVTTLDS LTTVYTEPAD VITKFKDSEE2160
 2161 ISSTYFPGSV IDYPEDIGVS LDRTITPESR TNADQIMISF PGIAPSITES VATKPERPQA2220
 2221 DTISTDLPIS EKELIKGKKE TGDGIILEVL DAYKDKREES EAELTKISLP ETGLAPTPSS2280
 2281 QTKEQPGSPH SVSGEISGQE KPTYRSPSGG LPVSTHPSKS HPFFRSSSLD ISAQPPPPPP2340
 2341 PPPPLPPATS PKPPTYPKRK LAAAAPVAPT AIVTAHADAI PTVEATAARR SNGLPATKIC2400
 2401 AAAPPPVPPK PSSIPTGLVF THRPEASKPP IAPKPAVPEI PVTTQKTTDT CPKPTGLPLT2460
 2461 SNMSLNLVTS ADYKLPSPTS PLSPHSNKSS PRYSKSLMET YVVITLPSEP GTPTDSSAAQ2520
 2521 AITSWPLGSP PKDLVSLETV FSVVPPMTST EIPSASQPTL YTSGALGTFS VTPAVTASLF2580
 2581 QTVPTSLTQF LPAEASKPEV SAVSSAVPSV APRSVSIPIP PEPLALDRHQ YKENGKLPLI2640
 2641 GDAIDLRTIP KSEVKVTEKC MDLSASAMDV KRQTTANEVY RRQISAVQPS IINLSAASSL2700
 2701 GTPVTMDSKT VAVVTCTDTT IYTTGTESQV GIEHAVTSPL QLTTSKHTEL QYRKPSSQAF2760
 2761 PMIRDEAPIN LSLGPSTQAV TLAVTKPVTV PPVGVTNGWT DSTISQGITD GEVVDLSTSK2820
 2821 SHRTVVTMDE STSNVVTKII EDEEKPVDLT AGRRAVCCDM VYKLPFGRSC TAQQPATTLP2880
 2881 EDRFGYRDDH YQYDRSGPYG YRGIGGMKPS MSDTNLAEAG HFFYKSKNAF DYSGGTEAAV2940
 2941 DLTSGRVSTG QYDVAIDPAL NCHYGVMHLV SGEQYPCSSF CLHFCFLWMV WPYILQYMCI3000
 3001 FVSPWFLLLS LPACACMLNI AFLPHLIRLT CGFACSPIHC AHQDKRAFTP KQHHSFWNWT3060
 3061 ITLPCISGEV MDYSSKTTGP YPETRQVISG VGISTPQYST ARMTPPPGPQ YGVGSVLRSS3120
 3121 NGVVYSSVAT PIPSTFAITT QPGSIFSTTV RDLSGIHTTD AITSLSALHQ SQPMPRSYFI3180
 3181 TTGASETDIS VTSIDINASL QTITMETLPA ETMDSVPTLT TASEVFSEVV GEESTLLIVP3240
 3241 DEDKQQQQLD LERELLELEK IKQQRFAEEL EWERQEIQRF REQEKIMVQK KLEELQSMKQ3300
 3301 HLLYQQEEER QAQFMMRQET LAQQQLQLEQ IQQLQQQLHQ QLEEQKLRQI YQYNYEPSGT3360
 3361 ASPQTTTEQA ILEGQYVATE GSQFWATEDA TTTASTVVAI EIPQSQGWYT VQSDGVTQYI3420
 3421 APPGILSTVS EIPLTDVVVK EEKQPKKRSS GAKVRGQYDE MGESMADDPR NLKKIVDSGV3480
 3481 QTDDEETADR TYASRRRRTK KSVDTSVQTD DEDQDEWDMP SRSRRKARTG KYGDSTAEGD3540
 3541 KTKPPSKVSS VAVQTVAEIS VQTEPLGTIR TPSIRARVDA KVEIIKHISA PEKTYKGGSL3600
 3601 GCQTETDPDT QSPPYMGATS PPKDKKRPTP LEIGYSSSHL RADPTVQLAP SPPKSPKVLY3660
 3661 SPISPLSPGH ALEPAFVPYE KPLPDDISPQ KVLHPDMAKV PPASPKTAKM MQRSMSDPKP3720
 3721 LSPTADESSR APFQYSEGFT AKGSQTTSGT QKKVKRTLPN PPPEEASTGT QSTYSTMGTA3780
 3781 SRRRMCRTNT MARAKILQDI DRELDLVERE SAKLRKKQAE LDEEEKEIDA KLRYLEMGIN3840
 3841 RRKEALLKER EKRERAYLQG VAEDRDYMSD SEVSSTRPSR VESQHGIERP RTAPQTEFSQ3900
 3901 FIPPQTQTEA QLVPPTSPYT QYQYSSPALP TQAPTPYTQQ SHFQQQTLYH QQVSPYQTQP3960
 3961 TFQAVATMSF TPQAQPTPTP QPSYQLPSQM MVIQQKPRQT TLYLEPKITS TYEVIRNQPL4020
 4021 MIAPVSTDNT YAVSHLGSKY NSLDLRIGLE ERSSMASSPI SSISADSFYA DIDHHTSRNY4080
 4081 VLIDDIGDIT KGTAALSSAF SLHEKDLSKT DRLLRTTETR RSQEVTDFLA PLQTSSRLHS4140
 4141 YVKAEEDSME DPYELKLLKH QIKQEFRRGT ESLDHLAGLS HYYHADTSYR HFPKSEKYSI4200
 4201 SRLTLEKQAA KQLPAAILYQ KQSKHKKALI DPKMSKFSPI QESRDLEPDY PTYLSSSTSS4260
 4261 IGGISSRARL LQDDITFGLR KNITDQQKFM GSSLGSGLGT LGNTIRSALQ DEADKPYSSG4320
 4321 SRSRPSSRPS SVYGLDLSIK RDSSSSSLRL KAQEAEALDV SFGHSSSSAR TKPTSLPISQ4380
 4381 SRGRIPIVAQ NSEEESPLSP VGQPMGMARA AAGPLPPISA DTRDQFGSSH SLPEVQQHMR4440
 4441 EESRTRGYDR DIAFIMDDFQ HAMSDSEAYH LRREETDWFD KPRESRLENG HGLDRKLPER4500
 4501 LVHSRPLSQH QEQILQMNGK TMHYIFPHAR IKITRDSKDH TVSGNGLGIR IVGGKEIPGH4560
 4561 SGEIGAYIAK ILPGGSAEHS GKLIEGMQVL EWNGIPLTSK TYEEVQSIIN QQSGEAEICV4620
 4621 RLDLNMLSDS ENPQHLELHE PPKVVDKAKS PGVDPKQLAA ELQKVSLQQS PLVMSSVVEK4680
 4681 GAHAHSGPTS AGSSSVPSPG QPGSPSVSKK KHGGSKPTDV SKTASHPITG EIQLQINYDL4740
 4741 GNLIIHILQA RNLVPRDNNG YSDPFVKVYL LPGRGVEYKR RTKYVQKSLN PEWNQTVIYK4800
 4801 SISMEQLMKK TLEVTVWDYD RFSSNDFLGE VLIDLSSTSH LDNTPRWYPL KEQTESIEHG4860
 4861 KSHSSQNSQQ SPKPSVIKSR SHGIFPDPSK DMQVPTIEKS HSSPGSSKSS SEGHLRSHGP4920
 4921 SRSQSKTSVA QTHLEDAGAA IAAAEAAVQQ LRIQPTKPTN HRPAETSVST GSSGSSVGSG4980
 4981 YSVDSEGSSC VAGEPNLLPI PRIGKMGQNG QDPVKQPGMG AADTEAKTQV MGEIKLALKK5040
 5041 EMKTDGEQLI VEILQCRNIT YKFKSPDHLP DLYVKIYVIN IATQKKVIKK KTRVCRHDRE5100
 5101 PSFNETFRFS LSPAGHSLQI LLFSNGGKFM KKTLIGEACI WLDKVDLRKR IVNWHKLLMS5160
 5161 PTQTH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle