YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S2539_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQDPGGIS PLQQMVASGA GAVVTSLFMT PLDVVKVRLQ SQRPSATSEL TTPSRFWSLS  60
   61 YTKSSSALQS PGKCLLYCNG VLEPLYLCPN GTRCATWFQD PTRFTGTLDA FVKIVRHEGT 120
  121 RTLWSGLPAT LVMTVPATAI YFTAYDQLKA FLCGQSLTSD LYAPMVAGAL ARMGTVTVVS 180
  181 PLELVRTKLQ AQHVSYRELA SSVQAAVTQG GWRSLWLGWG PTALRDVPFS ALYWFNYELV 240
  241 KSWLSGLRPK DQTSVGISFV AGGISGMVAA TLTLPFDVVK TQRQMSLGAV EAVRVKPPRV 300
  301 DSTWLLLRRI RAESGTRGLF AGFLPRIIKA APSCAIMIST YEFGKSFFQR LNQEQPLGR

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.67
Transmembrane Helix	15	35	0.67
Cytoplasmic	36	122	0.96
Transmembrane Helix	123	144	0.87
Non-Cytoplasmic	145	160	0.88
Transmembrane Helix	161	182	0.68
Cytoplasmic	183	214	0.66
Transmembrane Helix	215	235	0.39
Non-Cytoplasmic	236	254	0.52
Transmembrane Helix	255	276	0.88
Cytoplasmic	277	359	0.48