YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12004976
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAEPWRTRS VPEENVSASA ASVHTRPGAY LSASRRPPAA ALAPDQLSRS PSFPEARCAM  60
   61 ALALAALAAV EPACGSGYQQ LQNEEEPGEP EQTAGDAPPP YSSITAESAA YFDYKDESGF 120
  121 PKPPSYNVAT TLPSYDEAER TKTEATIPLV PGRDEDFVGR DDFDDTDQLR IGNDGIFMLT 180
  181 FFMAFLFNWI GFFLSFCLTT SAAGRYGAIS GFGLSLIKWI LIVRFSTYFP GYFDGQYWLW 240
  241 WVFLVLGFLL FLRGFINYAK VRKMPETFSN LPRTRVLFIY

Type	Start	End	Confidence
Non-Cytoplasmic	1	175	0.70
Transmembrane Helix	176	198	0.88
Cytoplasmic	199	205	0.62
Transmembrane Helix	206	223	0.80
Non-Cytoplasmic	224	236	0.77
Transmembrane Helix	237	256	0.95
Cytoplasmic	257	280	0.94