YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39A5_MOUSE
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.72
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	23	0.71
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	210	0.90
Transmembrane Helix	211	232	0.91
Cytoplasmic	233	242	0.78
Transmembrane Helix	243	264	0.94
Non-Cytoplasmic	265	282	0.95
Transmembrane Helix	283	305	0.87
Cytoplasmic	306	439	0.93
Transmembrane Helix	440	461	0.93
Non-Cytoplasmic	462	470	0.68
Transmembrane Helix	471	491	0.90
Cytoplasmic	492	500	0.84
Transmembrane Helix	501	523	0.92
Non-Cytoplasmic	524	535	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGPPVHHLLT GLCVGVALGW VGGSVPNLGP AEQEQNHYLA QLFGLYGENG TLTAGGLARL  60
   61 LHSLGLGRVQ GLRLGHHEPP TGRAAPTSGD NFTHRLQEPE LSVDIWAGMP LGPSGWGDQE 120
  121 ESKAPDLHGS GPSSLDLFQR LLLLDHSLAD HLNEDCLNGS QLLVNFGLSP VAPLTPRQFA 180
  181 LLCPALLYQI DSRVCIKTPA PAPPGDVLSA LLHSGLAVLF LSLPAPLSLL LLRLLGPRLL 240
  241 RPVLGFLGAL AVGTLCGDAL LHLLPHAQGG RHTGPSEQSE EDLGPGLSVL GGLFLLFMLE 300
  301 NTLGLVRHRG LRPRCCRNKR DLGEPNPDPE DGSGMVLRPL QAASEPEVQG QRENRQSSPS 360
  361 LAPPGHQGHS HEHRGGSIAW MVLLGDCLHN LTDGLALGAA FSDGFSSGLS TTLAVFCHEL 420
  421 PHELGDFAML LQEGLSFRKL LLLSLVSGAL GLGGAALGVG LSLGPVPLTP WVFGTTAGVF 480
  481 LYVALVDMLP TLLRPPEPLP VFHVLLQGLG LLLGGSLMFT IALLEEQLVP TVPDG