YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	K1CJ_MOUSE, K1C1...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVLYSSSSKQ FSSSRSGGGG GGGSVRVSST RGSLGGGYSS EGFSGGSFSR GSSGGGCFGG  60
   61 SSGGYGGFGG GGSFGGGYGG SSFGGGYGGS SFGGGYGGSS FGGAGFGGGG SFGGGSFGGG 120
  121 SYGGGFGGGG FGGDGGSLLS GNGRVTMQNL NDRLASYMDK VRALEESNYE LEGKIKEWYE 180
  181 KHGNSSQREP RDYSKYYKTI EDLKGQILTL TTDNANVLLQ IDNARLAADD FRLKYENEVT 240
  241 LRQSVEADIN GLRRVLDELT LSKSDLEMQI ESLNEELAYL KKNHEEEMRD LQNVSTGDVN 300
  301 VEMNAAPGVD LTQLLNNMRN QYEQLAEKNR KDAEEWFNQK SKELTTEIDS NIEQMSSHKS 360
  361 EITELRRTVQ GLEIELQSQL ALKQSLEASL AETEGRYCVQ LSQIQSQISA LEEQLQQIRA 420
  421 ETECQNAEYQ QLLDIKTRLE NEIQTYRSLL EGEGSSSGGG GGRRGGSGGG SYGGSSGGGS 480
  481 YGGSSGGGGS YGGSSGGGGS YGGGSSGGGS HGGSSGGGYG GGSSSGGAGG HGGSSGGGYG 540
  541 GGSSSGGQGG SGGFKSSGGG DQSSKGPRY

Type	Start	End	Confidence
Cytoplasmic	1	53	0.84
Transmembrane Helix	54	76	0.76
Non-Cytoplasmic	77	91	0.64
Transmembrane Helix	92	115	0.70
Cytoplasmic	116	117	0.39
Transmembrane Helix	118	141	0.61
Non-Cytoplasmic	142	569	0.63