YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TM50A_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGFLEGSRC SECMDWGEKR NTIASIAAGV LFFTGWWIII DAAVMYPRMD QFNHSYHTCG  60
   61 VIATIAFLMI NAVSNGQVRG DSYSEGCLGQ TGARIWLFIG FMLAFGSLIA SMWILFGGYV 120
  121 AKEKDVVYPG IAVFFQNAFI FFGGLVFKFG RTEDLWQ

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	40	0.95
Non-Cytoplasmic	41	53	0.82
Transmembrane Helix	54	74	0.92
Cytoplasmic	75	94	0.87
Transmembrane Helix	95	116	0.95
Non-Cytoplasmic	117	126	0.81
Transmembrane Helix	127	149	0.89
Cytoplasmic	150	157	0.88