YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	VN1A8_MOUSE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKDHTLYCS VYIRNAFFSE IGIGISANSC LLLFHTFMFI RGHRPRLTDL PIGFVALIHL  60
   61 VMLLLAAYIT EDFFMSSGGW DDITCKLVIF LHRFFRSLSV CATCLLSVFQ AIILCPQSSH 120
  121 LAKLKQNSPH QLSYFFIFLS IFYTSISSQI LIAAIPTQNI TFVNLIYITN SCSFLPLSSS 180
  181 MQHTFSTLLT FRNVFVIGLM GLSTCYMATL LCRHKTRSQR LQNSKLSPKA TPEQRALRTI 240
  241 LMLMSFFLLM STFDSIISYS RTIITGKSTA LLCPDSCRS

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.85
Transmembrane Helix	17	39	0.86
Cytoplasmic	40	49	0.76
Transmembrane Helix	50	70	0.95
Non-Cytoplasmic	71	93	0.85
Transmembrane Helix	94	114	0.90
Cytoplasmic	115	133	0.77
Transmembrane Helix	134	155	0.94
Non-Cytoplasmic	156	188	0.86
Transmembrane Helix	189	212	0.87
Cytoplasmic	213	235	0.91
Transmembrane Helix	236	257	0.85
Non-Cytoplasmic	258	279	0.90