YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62339417, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHATGLAAPA GTPRLRKWPS KRRVPVSQPG MADPHQFFDD TSSAPSRGYG GQPSPGGLGY  60
   61 PPSSSDAAFL AAPMSNMAMV YGSSLAAQGK ELVDKNIDRF IXVSKLKYYF AVDTVYVGKK 120
  121 LGLLVFPYLH QDWEVQYQQD TPVAPRFDIN APDLYIPAMG FITYILVAGL ALGTQDRFSP 180
  181 DLLGLQASSA LAWLTLKVVA ILLSLYLVTV NTDLTTIDLV AFLGYKYVGM IGGVLTGLLF 240
  241 GKIGYYLVLA WCCVSIFVFM IRTLRLKILA QAAAEGVPVR GARNQLRMYL TMAVAAAQPV 300
  301 LMYWLTFHLV R

Type	Start	End	Confidence
Cytoplasmic	1	153	0.88
Transmembrane Helix	154	174	0.92
Non-Cytoplasmic	175	189	0.77
Transmembrane Helix	190	210	0.91
Cytoplasmic	211	218	0.74
Transmembrane Helix	219	240	0.81
Non-Cytoplasmic	241	246	0.66
Transmembrane Helix	247	266	0.93
Cytoplasmic	267	285	0.96
Transmembrane Helix	286	307	0.91
Non-Cytoplasmic	308	311	0.85