YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120538646, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.25
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	63	0.99
Transmembrane Helix	64	86	0.89
Non-Cytoplasmic	87	97	0.67
Transmembrane Helix	98	119	0.70
Cytoplasmic	120	180	0.89
Transmembrane Helix	181	202	0.88
Non-Cytoplasmic	203	216	0.69
Transmembrane Helix	217	237	0.68
Cytoplasmic	238	295	0.65
Transmembrane Helix	296	315	0.62
Non-Cytoplasmic	316	320	0.47
Transmembrane Helix	321	335	0.25
Cytoplasmic	336	346	0.51
Transmembrane Helix	347	370	0.82
Non-Cytoplasmic	371	382	0.58
Transmembrane Helix	383	405	0.80
Cytoplasmic	406	414	0.63
Transmembrane Helix	415	436	0.76
Non-Cytoplasmic	437	440	0.59
Transmembrane Helix	441	460	0.84
Cytoplasmic	461	477	0.93
Transmembrane Helix	478	505	0.87
Non-Cytoplasmic	506	703	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEDLNCVAV GLLKRRVRQK RGVREIIKTK IQRNLSCTGP KIKSTLTGFF PVVKWLPKYK  60
   61 VKEYIWGDVM SGLIIGIILI PQAIAYCLLA GLEPIYGLYT SFFSNIIYFF MGTSRHVSVG 120
  121 IFSLMSLMVG QVVDREVFLA GFDLNEDSTK NAFGFNDTGE TNITAVNLKI MSLNMECGKE 180
  181 CYAISIATAL TFLAGVYQVL MAFLRLGFVS VYLSSPMLDG FATGASCTIL SVQAKYLLGL 240
  241 KIPRHQGYGT VVVTWINIFK NIHKTNFCDL ITSAICIIVL LAGKEIQDRY KKILQIPLPT 300
  301 ELVVVAVATI VSHFADLNGQ FSSSISGAIP TGFIPPKMPS IELMPRIAWD AIPLAVISFA 360
  361 FTVSLSEMFA KKHGYTVRPN QEMIAIGFCN IIPSFFHSFT TSAALAKTMV KDSAGCQTQV 420
  421 SSIVSALVVL LVLLFFAPFF YALQKCVLAC IIIVSLRGAL RKFRDVPKQW RQSKVEAIVW 480
  481 LVTMSSTALI SVELGLVIGV IFSMICVVVQ TQNPKVSLLG QIEQTNDYED MEEYDNLSPV 540
  541 PNVKIFRFQA PLFYANKDFF LKSLYKATKL EPFLELTRRR KLEKKVRAKG QKMTDGVDQT 600
  601 NGDVGICLIS KDVGFHTIIL DCSCISMIDT TAVSTFKTVS KDYKEVGVNV ILACCNTTVI 660
  661 DSLRKGSFFG ADDIDMDRLL FHTIHSAVCF ANSTTQPVND SSV