YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120538414, gi...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDASVMVGRG TGGAALFILI VFIVLLGDRS SRAQKGDGCG HTVLGVGSGS LASLGYPQSY  60
   61 PSQSVCEWEI SVTAGHKVLV RIADLDIDTN NCQVSYLRLY NGIGPGRTEI VKFCGSKEWK 120
  121 ELVIKSEGHQ VTVQFMSGPH HNGRGLFLSY TNSQHTDLIT CLEKGEHFSE AEFSKFCPAG 180
  181 CLIDFGEVSG TIPHGYRDSS PLCLAGIHAG VLSNTLGGAD QCGQQQRHPT LRKLTG

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.57
Transmembrane Helix	7	27	0.74
Cytoplasmic	28	37	0.57
Transmembrane Helix	38	56	0.43
Non-Cytoplasmic	57	236	0.80