YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|197247016, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRPKENFS QRQDTSAVRH RKTCKVNERA EIHSQPHNGT INGANKRITK RGGGEHISSP  60
   61 SRDAHVPVFI LALVIVLSVS TRFYKITEPP HVCWDETHFG KMGSYYINRT FFFDVHPPLG 120
  121 KMLIGLAGYL TGYDGTFPFI KPGDKYEHHN YWGMRAFCAA LGSCLPPFAF LVVLELSQSP 180
  181 TAALIAASLL IFDTGCITLS QYILLDPILM FFIMGSVLCM VKFNTQRLGP FSFSWWFWLL 240
  241 LTGLCLSGSL GVKFVGLFVI LLVGINTALD LWRLLGDLSL SLVDFGKHLL ARVFGLIMLP 300
  301 LFLYTTIFAI HFIVLNRSGP GDGFFSSAFQ SRLIGNNLHN ASMPEYLAYG SVITVKNLRI 360
  361 AGGYLHSHWH LYPEGVGAHQ QQVTAYLHKD FNNLWLVKRL DNSDDLTGSP ELVRHGDIIR 420
  421 LEHKETTRNL HSHFHEAPLT KKHLQVTGYG INGSGDVNDL WQVEVCGGRK GDPVKVLRSK 480
  481 VRFLHRATGC VLCSSGKTLP KWGWE

Type	Start	End	Confidence
Cytoplasmic	1	64	0.84
Transmembrane Helix	65	84	0.77
Non-Cytoplasmic	85	118	0.64
Transmembrane Helix	119	137	0.67
Cytoplasmic	138	150	0.65
Transmembrane Helix	151	174	0.87
Non-Cytoplasmic	175	181	0.59
Transmembrane Helix	182	205	0.64
Cytoplasmic	206	206	0.29
Transmembrane Helix	207	226	0.72
Non-Cytoplasmic	227	234	0.29
Transmembrane Helix	235	269	0.80
Cytoplasmic	270	289	0.56
Transmembrane Helix	290	315	0.85
Non-Cytoplasmic	316	505	0.66