YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|120538129, gi...
Protein type: Globular with Signal Peptide
Type Confidence: 0.97
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPCRVSVAA AAARRLSAAG DEEKKMAAGK ASEPEEESPR LSAQESDTLA RVDSSLFGYQ  60
   61 RLHEDGASMK ALLVKAVRCY ESLILKAEGK VDPEFFCQLG HFNLLLEEYP KALSAYQRYY 120
  121 SLQSDYWKNA AFLYGLGMVY FHYNAFQWAI KAFQEVLYID PGFSRAKEIH LRLGLMFKVN 180
  181 TDYESSLKHF QLALIDSSRC TLSKAEIQFH IAHLYEIQKR HRAAKEAYES LLQTEDLQTP 240
  241 VRAAALQQLG WMHHTVEQLG DKANKDSYAI QCLQKSLEAD PNSGQSWYFL GRCYSSIGKV 300
  301 QDAFISYRQS IDKSEASADT WCSIGVLYQQ QNQPMDALQA YICAVQLDHS HAAAWMDLGT 360
  361 LYESCNQPHD AIKCYINATR SKTCSNTAAL AARIKYLQAC KAQPGASSGS QASAPALPPH 420
  421 STALEPAGAQ TSPARRRRSS SPAQSSTDSW SSGSAHTPVP HWYLTPQKLQ LLEQLRASRA 480
  481 SLKPAQLQML EQMEAQLSAM HLHQQQMRQN SSGQIRPSLS NGPSLPASRG PALQTLHNGP 540
  541 GPRPGPQTPA VRNNHTESRA NGDVPYLHPN TLPHNCTSPG AGRRSPQLPP AQGLQKGPGS 600
  601 HWAGPNGIRS DSSSGSADGG PHNQVVDSAS AGDAAGSSGS PPPRRCSPCA LPHTATSGAP 660
  661 HSTIPTKESA ALQANGSTAT DTHSPASPHR PPSPVSATTT DNPPLPNLQT LPATAPAAPL 720
  721 TPVGSTLPAP GSSSASSPAS ALSAASPSPR PGDPTTPLRP LQAPVTVNGC SEDSRSPLKL 780
  781 EPEQSITSSA AHRSASISIY PTSTDALKAC RSLGRNGLSS CSLLLNRCPP PRLPPPPAPP 840
  841 LDKDKLNPPT PSIYLENKRD AFFPPLHQFC TNPSNPVTVI RGLAGALKLD LGLFSTKTLV 900
  901 DMNPEHLVEV RTQLSQPADE NWDASGTRKQ WRCESTRSHT TIAKYAQYQA ASFQESLREE 960
  961 NEKKGQKELS DSEIASSESV CRRRKGPFKQ VKFGMNIDVS DEKKWKLQLQ ELSKLPAFAR1020
 1021 VVSAGNLLSH VGHRILGMNT VQLCMKVPGS RTPGHQEHNN FCAVNINIGP GDCEWFAVPE1080
 1081 PYWGVMSEFC ERNNINFLKG SWWPNLEDLY EARVPVYRFI QRPGDLVWLN TGTVHWGQAI1140
 1141 GWCNNISWNV GPLTAHQYKL AVERYEWNKL QSVKSMVPMV HLSWNMARNI KVADQRLFEM1200
 1201 IKFCLLRTLR QTQSIRESLL SAGKETLWQR RSRDEPAHYC SVCEVEVWNL LFVCSEGSPC1260
 1261 RPAAAVQCQD CARKASVDLQ GFVVLQQFRM EDLTQLYEQF SLAPALHSSS S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle