YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|120537579, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMDSSAAL HLNLLTLTVM FCFSLLCGFS PGFFMRQAAR YTSDPGSRLR ALSLASCLSS  60
   61 GVFLGFSLLD LLPKYLTDMR DTFSRLDITL RFPLSEFLLA MGVLLVLLVE QMLLAFSEQV 120
  121 CVSSVEKQTL IERTRLYVED SRTHEALRVC LLLLCVCVRS LLEGVCAAPP PLWSCGAALL 180
  181 REGLLAFGLA LRLAPAGLRR AVATGGLVLF CSARPVAMGT AMLRGTPGDQ AYTADVVRCA 240
  241 VEGLTCGIFI CISISGLLFP ESSSPKQRMH KVAFLLTGFA LVTAVLISQV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.51
Transmembrane Helix	10	34	0.87
Non-Cytoplasmic	35	48	0.51
Transmembrane Helix	49	72	0.87
Cytoplasmic	73	87	0.52
Transmembrane Helix	88	114	0.74
Non-Cytoplasmic	115	171	0.52
Transmembrane Helix	172	191	0.69
Cytoplasmic	192	200	0.69
Transmembrane Helix	201	223	0.84
Non-Cytoplasmic	224	238	0.85
Transmembrane Helix	239	259	0.94
Cytoplasmic	260	268	0.88
Transmembrane Helix	269	288	0.90
Non-Cytoplasmic	289	290	0.83